PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG343600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 257aa    MW: 27456.1 Da    PI: 5.9585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG343600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.7e-0997142454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er  Rd++  +f eLr  +P+       +++Ka+ L  A  YI +L
  Pavir.6NG343600.1.p  97 THVEAERLQRDKLHRRFCELRAAVPTV-----SRMDKASLLFDAATYIAQL 142
                          799***********************6.....4****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.99593142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-896147No hitNo description
SuperFamilySSF474591.57E-1396160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1297155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-697142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-699148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDEMVCPASS GSSPSPATFF STTGQHQELE FMPCDVLLEG WLEDDDSMDG PPDGISCGDE  60
GSRSPGNDVL LSGEPPAPAP KRRGRKPGPR SNGPALTHVE AERLQRDKLH RRFCELRAAV  120
PTVSRMDKAS LLFDAATYIA QLRSRVKQLE SENRLAAAAA AATPVAATYS VGVQENLEVR  180
MVGRDAAALR LTTAARHAPA RFMLALQWLD LPVQHASVCL VGGMTVQDAV VDVPAAALRD  240
ERALRAALLH QLQQTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444645.12e-90hypothetical protein SORBIDRAFT_07g025330
TrEMBLC5YH822e-90C5YH82_SORBI; Putative uncharacterized protein Sb07g025330
STRINGSb07g025330.15e-90(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-19bHLH family protein